#!/bin/bash
#SBATCH --job-name=MaxQuant-Job         
#SBATCH --partition=batch
#SBATCH --nodes=1                       
#SBATCH --ntasks=1       
#SBATCH --cpus-per-task=20
#SBATCH --time=10:00:00    
#SBATCH --output=%j.log

module load maxquant/2.7.5

sed -i "s/<numThreads>.*<\/numThreads>/<numThreads>$SLURM_CPUS_PER_TASK<\/numThreads>/g" mqpar.xml

/mnt/apps/prebuilt/MaxQuant/maxquant.sh mqpar.xml > analysis_log.txt 2>&1