#!/bin/bash
#SBATCH --job-name=velvet-1.2.10-case
#SBATCH --partition=rome
#SBATCH --nodes=1
#SBATCH --ntasks-per-node=8
#SBATCH --time=12:00:00
#SBATCH --mem=100gb

module load gcc/13.2.0-iqpfkya velvet/1.2.10
export OMP_NUM_THREADS=$SLURM_NTASKS_PER_NODE

velveth output_directory/ 51 -fasta -short input_reads.fasta -fasta -shortPaired2 -separate input_reads_pair_1.fasta input_reads_pair_2.fasta
velvetg output_directory/ -min_contig_lgth 200